Just a warning: double check your return types in R, especially when using different modeling packages. Continue reading Check your return types when modeling in R

# All posts by John Mount

# Soft margin is not as good as hard margin

This note is a link to an excerpt from my upcoming monster support vector machine article where I work through a number of sections of [Vapnik, 1998] Vapnik, V. N. (1998), *Statistical Learning Theory*, Wiley. I try to run down how the original theoretical claims are precisely linked to what is said about the common implementations. The write-up is fairly technical and very large (26 pages).

Here we are extracting an appendix: “Soft margin is not as good as hard margin.” In it we build a toy problem that is not large-margin separated and note that if the dimension of the concept space you were working in was not obvious (i.e. you were forced to rely on the margin derived portion of generalization bounds) then generalization improvement for a soft margin SVM is much slower than you would expect given experience from the hard margin theorems. The punch-line is: every time you get eight times as much training data you only halve your expected excess generalization error bound (whereas once you get below a data-set’s hard-margin bound you expect one to one reduction of the bound with respect to training data set size). What this points out is: the soft margin idea can simulate margin, but it comes at a cost. Continue reading Soft margin is not as good as hard margin

# R bracket is a bit irregular

While skimming Professor Hadley Wickham’s Advanced R I got to thinking about nature of the square-bracket or extract operator in R. It turns out “`[,]`

” is a bit more irregular than I remembered.

The subsetting section of Advanced R has a very good discussion on the subsetting and selection operators found in R. In particular it raises the important distinction of two simultaneously valuable but incompatible desiderata: simplification of results versus preservation of results. Continue reading R bracket is a bit irregular

# A bit more on testing

If you liked Nina Zumel’s article on the limitations of Random Test/Train splits you might want to check out her recent article on predictive analytics product evaluation hosted by our friends at Fliptop. Continue reading A bit more on testing

# Let’s try to motivate schemes

Recently there has been some controversy over David Mumford’s Nature magazine *invited* obituary of Alexander Grothendieck being initially rejected on submission (see here and here). At issue was the attempt to explain the mathematical idea of schemes (one of Alexander Grothendieck’s most important contributions) to a non-mathematician audience. Professor Mumford is a mathematician of great stature and his explanation is better than anything I could even attempt. However, in addition to the issues he raises I don’t think he was sensitive enough to what a non-mathematician considers motivation.

I’ll take a quick stab at explaining a very tiny bit of the motivation of schemes. I not sure the kind of chain of analogies argument I am attempting would work in an obituary (or in a short length), so I certainly don’t presume to advise professor Mumford on his obituary of a great mathematician (and person). Continue reading Let’s try to motivate schemes

# Is there a Kindle edition of Practical Data Science with R?

We have often been asked “why is there no Kindle edition of Practical Data Science with R on Amazon.com?” The short answer is: there is an edition you can read on your Kindle: but it is from the publisher Manning (not Amazon.com). Continue reading Is there a Kindle edition of Practical Data Science with R?

# A comment on preparing data for classifiers

I have been working through (with some honest appreciation) a recent article comparing many classifiers on many data sets: “Do we Need Hundreds of Classifiers to Solve Real World Classification Problems?” Manuel Fernández-Delgado, Eva Cernadas, Senén Barro, Dinani Amorim; 15(Oct):3133−3181, 2014 (which we will call “the DWN paper” in this note). This paper applies 179 popular classifiers to around 120 data sets (mostly from the UCI Machine Learning Repository). The work looks good and interesting, but we do have one quibble with the data-prep on 8 of the 123 shared data sets. Given the paper is already out (not just in pre-print) I think it is appropriate to comment publicly. Continue reading A comment on preparing data for classifiers

# Great new post by Win-Vector’s Nina Zumel

Win-Vector LLC’s Nina Zumel has a great new article on the issue of taste in design and problem solving: Design, Problem Solving, and Good Taste. I think it is a *big* issue: how can you expect good work if you can’t even discuss how to tell good from bad?

# Excel spreadsheets are hard to get right

Any practicing data scientist is going to eventually have to work with a data stored in a Microsoft `Excel`

spreadsheet. A lot of analysts use this format, so if you work with others you are going to run into it. We have already written how we don’t recommend using `Excel`

-like formats to exchange data. But we know if you are going to work with others you are going to have to make accommodations (we even built our own modified version of `gdata`

‘s underlying `Perl`

script to work around a bug).

But one thing that continues to confound us is how hard it is to read `Excel`

data correctly. When `Excel`

exports into `CSV/TSV`

style formats it uses fairly clever escaping rules about quotes and new-lines. Most `CSV/TSV`

readers fail to correctly implement these rules and often fail on fields that contain actual quote characters, separators (tab or comma), or new-lines. Another issue is `Excel`

itself often transforms data without any user verification or control. For example: `Excel`

routinely turns date-like strings into time since epoch (which it then renders as a date). We recently ran into another uncontrollable `Excel`

transform: changing the strings “`TRUE`

” and “`FALSE`

” into 1 and 0 inside the actual “`.xlsx`

” file. That is `Excel`

does not faithfully store the strings “`TRUE`

” and “`FALSE`

” even in its native format. Most `Excel`

users do not know about this, so they certainly are in no position to warn you about it.

This would be a mere annoyance, except it turns out `Libre Office`

(or at least LibreOffice_4.3.4_MacOS_x86-64) has a severe and silent data mangling bug on this surprising Microsoft boolean type.

We first ran into this in client data (and once the bug triggered it seemed to alter most of the columns), but it turns out the bug is very easy to trigger. In this note we will demonstrate the data representation issue and bug. Continue reading Excel spreadsheets are hard to get right

# Can we try to make an adjustment?

In most of our data science teaching (including our book Practical Data Science with R) we emphasize the deliberately easy problem of “exchangeable prediction.” We define exchangeable prediction as: given a series of observations with two distinguished classes of variables/observations denoted “x”s (denoting control variables, independent variables, experimental variables, or predictor variables) and “y” (denoting an outcome variable, or dependent variable) then:

- Estimate an approximate functional relation
`y ~ f(x)`

. - Apply that relation to new instances where
`x`

is known and`y`

is not yet known.

An example of this would be to use measured characteristics of online shoppers to predict if they will purchase in the next month. Data more than a month old gives us a training set where both `x`

and `y`

are known. Newer shoppers give us examples where only `x`

is currently known and it would presumably be of some value to estimate `y`

or estimate the probability of different `y`

values. The problem is philosophically “easy” in the sense we are not attempting inference (estimating unknown parameters that are not later exposed to us) and we are not extrapolating (making predictions about situations that are out of the range of our training data). All we are doing is essentially generalizing memorization: if somebody who shares characteristics of recent buyers shows up, predict they are likely to buy. We repeat: we are *not* forecasting or “predicting the future” as we are not modeling how many high-value prospects will show up, just assigning scores to the prospects that do show up.

The reliability of such a scheme rests on the concept of exchangeability. If the future individuals we are asked to score are exchangeable with those we had access to during model construction then we expect to be able to make useful predictions. How we construct the model (and how to ensure we indeed find a good one) is the core of machine learning. We can bring in any big name machine learning method (deep learning, support vector machines, random forests, decision trees, regression, nearest neighbors, conditional random fields, and so-on) but the legitimacy of the technique pretty much stands on some variation of the idea of exchangeability.

One effect antithetical to exchangeability is “concept drift.” Concept drift is when the meanings and distributions of variables or relations between variables changes over time. Concept drift is a killer: if the relations available to you during training are thought not to hold during later application then you should not expect to build a useful model. This one of the hard lessons that statistics tries so hard to quantify and teach.

We know that you should always prefer fixing your experimental design over trying a mechanical correction (which can go wrong). And there are no doubt “name brand” procedures for dealing with concept drift. However, data science and machine learning practitioners are at heart tinkerers. We ask: can we (to a limited extent) attempt to directly correct for concept drift? This article demonstrates a simple correction applied to a deliberately simple artificial example.

Image: Wikipedia: Elgin watchmaker